Seminal papers that have shaped my scientific experience. Resources I have accessed over the years that have been extremely useful.

Genetics

Constructing genetic map

JoinMap

Critical and example papers include:

Quantitiative trait locus analysis

Critical papers include:

Churchill and Doerge (1996) Permutations tests for multiple loci affecting a quantitative character. Genetics 142:285-294.

Transgressive segregation

Critical papers include:

deVicente and Tanksley (1993) QTL analysis of transgressive segregation in an interspecific tomato cross. Genetics 134:585-596.

Genomics

Visualization of genes and genomes

gggenes
dgenies provides dotplots for large genomes

Molecular Evolution

PAML

Data, visualization, and figures

Compendium of data visualization tools.
Vecteezy is a free vector art searchable repository.

High-throughput sequencing

Tools for mapping high-throughput sequencing data
RNAseqlopedia
RNAseq tutorial from the Griffith Lab
Counts, TPM, RPKM, and FPKM

Last updated: 2018 October 12